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Molecular dynamics analysis of phytochemicals from Ageratina adenophora against COVID-19 main protease (Mpro) and human angiotensin-converting enzyme 2 (ACE2).

Identifieur interne : 000329 ( Main/Exploration ); précédent : 000328; suivant : 000330

Molecular dynamics analysis of phytochemicals from Ageratina adenophora against COVID-19 main protease (Mpro) and human angiotensin-converting enzyme 2 (ACE2).

Auteurs : Netra Prasad Neupane [Inde] ; Abhishek Kumar Karn [Inde] ; Imdad Husen Mukeri [Inde] ; Prateek Pathak [Russie] ; Praveen Kumar [Inde] ; Samayaditya Singh [Inde] ; Insaf Ahmed Qureshi [Inde] ; Tarun Jha [Inde] ; Amita Verma [Inde]

Source :

RBID : pubmed:33527003

Abstract

The outbreak of COVID-19 created unprecedented strain in the healthcare system. Various research revealed that COVID-19 main protease (Mpro) and human angiotensin-converting enzyme 2 (ACE2) are responsible for viral replication and entry into the human body, respectively. Blocking the activity of these enzymes gives a potential therapeutic target for the COVID-19. The objective of the study was to explore phytochemicals from Ageratina adenophora against SARS-CoV-2 through in-silico studies. In this study, 34 phytochemicals of A. adenophora were docked with Mpro and ACE2 through AutoDock Tools-1.5.6 and their binding affinity was studied. Phytochemicals with higher affinity have been chosen for further molecular dynamics simulations to determine the stability with target protein. Molecular dynamics simulations were studied on GROMACS 5.1.4 version. Furthermore, 5-β-glucosyl-7-demethoxy-encecalin (5GDE) and 2-oxocadinan-3,6(11)-dien-12,7-olide (BODO) were found to be potential blockers with excellent binding affinity with Mpro and ACE2 than their native inhibitors remdesivir and hydroxychloroquine respectively. The drug likeness study and pharmacokinetics of the phytoconstituents present in A. adenophora provide an excellent support for the lead drug discovery against COVID-19.

DOI: 10.1016/j.bcab.2021.101924
PubMed: 33527003
PubMed Central: PMC7839396


Affiliations:


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<div type="abstract" xml:lang="en">The outbreak of COVID-19 created unprecedented strain in the healthcare system. Various research revealed that COVID-19 main protease (M
<sup>pro</sup>
) and human angiotensin-converting enzyme 2 (ACE2) are responsible for viral replication and entry into the human body, respectively. Blocking the activity of these enzymes gives a potential therapeutic target for the COVID-19. The objective of the study was to explore phytochemicals from
<i>Ageratina adenophora</i>
against SARS-CoV-2 through
<i>in-silico</i>
studies. In this study, 34 phytochemicals of
<i>A. adenophora</i>
were docked with M
<sup>pro</sup>
and ACE2 through AutoDock Tools-1.5.6 and their binding affinity was studied. Phytochemicals with higher affinity have been chosen for further molecular dynamics simulations to determine the stability with target protein. Molecular dynamics simulations were studied on GROMACS 5.1.4 version. Furthermore, 5-β-glucosyl-7-demethoxy-encecalin (5GDE) and 2-oxocadinan-3,6(11)-dien-12,7-olide (BODO) were found to be potential blockers with excellent binding affinity with Mpro and ACE2 than their native inhibitors remdesivir and hydroxychloroquine respectively. The drug likeness study and pharmacokinetics of the phytoconstituents present in A. adenophora provide an excellent support for the lead drug discovery against COVID-19.</div>
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<sup>pro</sup>
) and human angiotensin-converting enzyme 2 (ACE2) are responsible for viral replication and entry into the human body, respectively. Blocking the activity of these enzymes gives a potential therapeutic target for the COVID-19. The objective of the study was to explore phytochemicals from
<i>Ageratina adenophora</i>
against SARS-CoV-2 through
<i>in-silico</i>
studies. In this study, 34 phytochemicals of
<i>A. adenophora</i>
were docked with M
<sup>pro</sup>
and ACE2 through AutoDock Tools-1.5.6 and their binding affinity was studied. Phytochemicals with higher affinity have been chosen for further molecular dynamics simulations to determine the stability with target protein. Molecular dynamics simulations were studied on GROMACS 5.1.4 version. Furthermore, 5-β-glucosyl-7-demethoxy-encecalin (5GDE) and 2-oxocadinan-3,6(11)-dien-12,7-olide (BODO) were found to be potential blockers with excellent binding affinity with Mpro and ACE2 than their native inhibitors remdesivir and hydroxychloroquine respectively. The drug likeness study and pharmacokinetics of the phytoconstituents present in A. adenophora provide an excellent support for the lead drug discovery against COVID-19.</AbstractText>
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<name sortKey="Karn, Abhishek Kumar" sort="Karn, Abhishek Kumar" uniqKey="Karn A" first="Abhishek Kumar" last="Karn">Abhishek Kumar Karn</name>
<name sortKey="Kumar, Praveen" sort="Kumar, Praveen" uniqKey="Kumar P" first="Praveen" last="Kumar">Praveen Kumar</name>
<name sortKey="Mukeri, Imdad Husen" sort="Mukeri, Imdad Husen" uniqKey="Mukeri I" first="Imdad Husen" last="Mukeri">Imdad Husen Mukeri</name>
<name sortKey="Qureshi, Insaf Ahmed" sort="Qureshi, Insaf Ahmed" uniqKey="Qureshi I" first="Insaf Ahmed" last="Qureshi">Insaf Ahmed Qureshi</name>
<name sortKey="Singh, Samayaditya" sort="Singh, Samayaditya" uniqKey="Singh S" first="Samayaditya" last="Singh">Samayaditya Singh</name>
<name sortKey="Verma, Amita" sort="Verma, Amita" uniqKey="Verma A" first="Amita" last="Verma">Amita Verma</name>
</country>
<country name="Russie">
<noRegion>
<name sortKey="Pathak, Prateek" sort="Pathak, Prateek" uniqKey="Pathak P" first="Prateek" last="Pathak">Prateek Pathak</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

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EXPLOR_STEP=$WICRI_ROOT/Sante/explor/CovidChloroV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000329 | SxmlIndent | more

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{{Explor lien
   |wiki=    Sante
   |area=    CovidChloroV1
   |flux=    Main
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   |texte=   Molecular dynamics analysis of phytochemicals from Ageratina adenophora against COVID-19 main protease (Mpro) and human angiotensin-converting enzyme 2 (ACE2).
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       | NlmPubMed2Wicri -a CovidChloroV1 

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Data generation: Sat May 22 17:02:32 2021. Site generation: Sat May 22 17:06:52 2021